pachterlab
Pachter Lab Joined Dec 2014 View on GitHub
- Stars
- 4,979
- across 186 public repos
- Rank
- #7,114
- of 95,324 organizations, top 8%
Repositories with 50+ stars
| Rank | Repository | Language | Stars |
|---|---|---|---|
| 84,147 | Near-optimal RNA-Seq quantification | C | 777 |
| 105,753 | A tool to find sequencing data and metadata from public databases. | Python | 606 |
| 114,643 | Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023 | Jupyter Notebook | 555 |
| 187,582 | Differential analysis of RNA-Seq | R | 318 |
| 225,822 | poseidon system - open source syringe pumps and microscope for laboratories | Jupyter Notebook | 256 |
| 265,010 | 📝 Automated manuscript validation and submission portal completion | Python | 211 |
| 284,057 | A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing | Python | 194 |
| 395,067 | machine-readable file format for genomic library sequence and structure | Python | 130 |
| 415,631 | kallisto | bustools workflow for pre-processing single-cell RNA-seq data | 122 | |
| 461,105 | From geospatial to spatial -omics | R | 107 |
| 471,479 | Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. | Python | 104 |
| 629,886 | Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape. | Jupyter Notebook | 72 |
| 717,330 | Preprocessing of single-cell RNA-Seq (deprecated) | Jupyter Notebook | 61 |
| 736,353 | Extension of SpatialExperiment with sf | R | 59 |
| 767,299 | TeX | 56 |
Among 95,324 organizations
4k–6.3k stars: 2,608 organizations, including pachterlab
Stars along the bottom, and organizations in each band on a log scale
Where the stars are
Languages
- Python 1.2k stars, 25% · 5 repos
- Jupyter Notebook 944 stars, 19% · 4 repos
- C 777 stars, 16% · 1 repo
- R 484 stars, 10% · 3 repos
- TeX 56 stars, 1% · 1 repo
When they were made
15 repos with 50+ stars, made between 2014 and 2026
Quick stats
- Next rank
- +2 stars to reach #7,112
- Next milestone
- +30,056 stars to reach the top 1%
- Public repos
- 186, 15 with 50+ stars
- Popular repos
- 11 over 100 stars
- Top repo
- kallisto, #84,147 of all repos, 16% of stars
- Smaller repos
- 1,351 stars from repos under 50