mahmoodlab
Mahmood Lab @ Harvard/MGB Joined Dec 2019 View on GitHub
- Stars
- 8,718
- across 41 public repos
- Rank
- #4,380
- of 94,827 organizations, top 5%
- Down 290 places this week
Repositories with 50+ stars
| Rank | Repository | Language | Stars |
|---|---|---|---|
| 38,677 | Open source tools for computational pathology - Nature BME | Python | 1,770 |
| 81,699 | Pathology Foundation Model - Nature Medicine | Jupyter Notebook | 799 |
| 97,860 | Toolkit for large-scale whole-slide image processing. | Python | 656 |
| 103,014 | Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral) | Jupyter Notebook | 621 |
| 117,044 | Vision-Language Pathology Foundation Model - Nature Medicine | Python | 540 |
| 137,908 | Integrating histology and spatial transcriptomics - NeurIPS 2024 | Jupyter Notebook | 449 |
| 160,907 | Multimodal Whole Slide Foundation Model for Pathology - Nature Medicine | Python | 377 |
| 180,470 | Fusing Histology and Genomics via Deep Learning - IEEE TMI | Jupyter Notebook | 331 |
| 221,417 | Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021 | Jupyter Notebook | 261 |
| 227,889 | Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell | Jupyter Notebook | 252 |
| 259,006 | Foundation Model for Multiplex Spatial Proteomic Images | Jupyter Notebook | 216 |
| 275,972 | cGAN-based Multi Organ Nuclei Segmentation | Python | 200 |
| 293,118 | AI-based pathology predicts origins for cancers of unknown primary - Nature | Python | 186 |
| 309,796 | Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021 | Python | 174 |
| 311,270 | Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024 | Python | 173 |
| 332,301 | Standardized benchmark for computational pathology foundation models. | Python | 160 |
| 335,751 | Feather - Lightweight supervised slide foundation models (ICML 2025) | Python | 158 |
| 350,415 | Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024 | Jupyter Notebook | 150 |
| 408,702 | Multimodal prototyping for cancer survival prediction - ICML 2024 | Jupyter Notebook | 124 |
| 411,291 | Analysis of 3D pathology samples using weakly supervised AI - Cell | Python | 123 |
| 419,403 | Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023 | Python | 120 |
| 419,403 | Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024 | Python | 120 |
| 436,799 | Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering | Python | 114 |
| 459,235 | A parameter-efficient mixture-of-experts module for computational pathology - ICLR | Python | 107 |
| 535,295 | Spatial biology processing suite | Jupyter Notebook | 88 |
| 648,250 | MADELEINE: multi-stain slide representation learning (ECCV'24) | Python | 69 |
| 663,603 | Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications | Jupyter Notebook | 67 |
| 774,412 | Compilation of publicly available datasets in 3D Computational Pathology | 55 | |
| 821,538 | Spatial Expression-Aligned Learning to improve pathology foundation models | 51 |
Among 94,827 organizations
6.3k–10k stars: 1,978 organizations, including mahmoodlab
Stars along the bottom, and organizations in each band on a log scale
Where the stars are
Languages
- Python 5k stars, 58% · 16 repos
- Jupyter Notebook 3.4k stars, 39% · 11 repos
When they were made
29 repos with 50+ stars, made between 2018 and 2026
Quick stats
- Next rank
- +2 stars to reach #4,379
- Next milestone
- +26,255 stars to reach the top 1%
- Public repos
- 41, 29 with 50+ stars
- Popular repos
- 24 over 100 stars, 1 over 1k stars
- Top repo
- CLAM, #38,677 of all repos, 20% of stars
- Smaller repos
- 207 stars from repos under 50