immunogenomics
Raychaudhuri Lab Joined Aug 2015 View on GitHub
- Stars
- 1,886
- across 74 public repos
- Rank
- #14,874
- of 94,827 organizations, top 16%
Repositories with 50+ stars
| Rank | Repository | Language | Stars |
|---|---|---|---|
| 95,374 | Fast, sensitive and accurate integration of single-cell data with Harmony | R | 675 |
| 254,215 | Fast Wilcoxon and auROC | R | 221 |
| 400,912 | Efficient and precise single-cell reference atlas mapping with Symphony | Jupyter Notebook | 127 |
| 427,928 | Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs | Jupyter Notebook | 117 |
| 530,469 | Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA | R | 89 |
| 560,658 | Methods to compute Local Inverse Simpson's Index (LISI) | R | 83 |
| 607,107 | A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease" | Jupyter Notebook | 75 |
| 742,438 | Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets. | Python | 58 |
| 752,797 | HLA-TAPAS pipeline for HLA association and fine-mapping studies | Jupyter Notebook | 57 |
Among 94,827 organizations
1.6k–2.5k stars: 4,559 organizations, including immunogenomics
Stars along the bottom, and organizations in each band on a log scale
Where the stars are
Languages
- R 1.1k stars, 57% · 4 repos
- Jupyter Notebook 376 stars, 20% · 4 repos
- Python 58 stars, 3% · 1 repo
When they were made
9 repos with 50+ stars, made between 2018 and 2024
Quick stats
- Next rank
- +1 star to reach #14,868
- Next milestone
- +1,558 stars to reach the top 10%
- Public repos
- 74, 9 with 50+ stars
- Popular repos
- 4 over 100 stars
- Top repo
- harmony, #95,374 of all repos, 36% of stars
- Smaller repos
- 384 stars from repos under 50