flatironinstitute

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

Deep functional residue identification

Complete Matlab pipeline for large scale calcium imaging data analysis

Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in...

Matlab routines for online non-rigid motion correction of calcium imaging data

NEural MOdelS, a statistical modeling framework for neuroscience.

JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

Neural Networks for Protein Sequence Alignment

JAXMg: A multi-GPU linear solver in JAX

Nonuniform fast Fourier transforms of types 1 and 2, in 1D, 2D, and 3D, on the GPU

Learning materials for scientific software development

Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

Within-orbit Adaptive Leapfrog No-U-Turn Sampler

MountainSort spike sorting algorithm, version 5

Browser-based NWB visualization and DANDI exploration

Run Stan models in the browser

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

nix+spack = nixpack (spanix?)

A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.